Deprecated API

Deprecated Fields

chemaxon.struc.MoleculeGraph.AROM_CHEMAXON
please use AROM_BASIC instead. Chemaxon aromatization.

chemaxon.struc.MoleculeGraph.AROM_DAYLIGHT
please use AROM_GENERAL instead. Daylight aromatization (modified Huckel rule).

chemaxon.formats.MdlCompressor.TEXTMODE
as of Marvin 3.1, there is no possibility to do that

chemaxon.struc.MolAtom.VALCHK_ATTACH
as of Marvin 3.5, attachment points are always checked

Deprecated Methods

chemaxon.struc.RxnMolecule.addStructure(Molecule, int)
as of Marvin 4.1, replaced by RxnMolecule.addComponent(Molecule, int)

chemaxon.struc.RxnMolecule.addStructure(Molecule, int, boolean)
as of Marvin 4.1, replaced by RxnMolecule.addComponent(Molecule, int, boolean)

chemaxon.formats.MolInputStream.canBeAbbrevgroup(String)
as of Marvin 4.1, MFileFormatUtil.canBeAbbrevgroup(String) must be used instead

chemaxon.formats.MFileFormatUtil.canBeBase64(String)
as of Marvin 4.1, MFileFormatUtil.canBeBase64(String) must be used instead

chemaxon.formats.MolInputStream.canBeBase64(String)
as of Marvin 4.1, MFileFormatUtil.canBeBase64(String) must be used instead

chemaxon.formats.MolInputStream.canBeChime(String)
as of Marvin 4.1, MFileFormatUtil.canBeChime(String) must be used instead

chemaxon.formats.MolInputStream.canBeJTF(String)
as of Marvin 4.1, MFileFormatUtil.canBeJTF(String) must be used instead

chemaxon.formats.MolInputStream.canBeSMARTS(String)
as of Marvin 4.1, MFileFormatUtil.canBeSMARTS(String) must be used instead

chemaxon.formats.MolInputStream.canBeSMILES(String)
as of Marvin 4.1, MFileFormatUtil.canBeSMILES(String) must be used instead

chemaxon.struc.RgMolecule.createMol(String)
As of Marvin 3.4, MolImportIface.createMol() must be used.

chemaxon.struc.MoleculeGraph.getAromrings()
please use getAromaticAndAliphaticRings instead.

chemaxon.struc.MoleculeGraph.getAromrings(int)
please use getAromaticAndAliphaticRings instead.

chemaxon.struc.MoleculeGraph.getGrinv(int[], boolean)
Please use getGrinv(int[], int) instead.

chemaxon.formats.MolInputStream.getJtfFields(String)
as of Marvin 4.1, MFileFormatUtil.getJTFFields(String) must be used instead

chemaxon.struc.MoleculeGraph.getNonAromrings()
please use getAromaticAndAliphaticRings instead.

chemaxon.struc.MoleculeGraph.getNonAromrings(int)
please use getAromaticAndAliphaticRings instead.

chemaxon.struc.Molecule.getPropertyKeys()
as of Marvin 4.1, replaced by properties().getKeys()

chemaxon.struc.MoleculeGraph.getSSSRBondSet()
please use getSSSRBondSetInLong() instead.

chemaxon.struc.RxnMolecule.getStructure(int, int)
as of Marvin 4.1, replaced by RxnMolecule.getComponent(int, int)

chemaxon.struc.RxnMolecule.getStructureCount(int)
as of Marvin 4.1, replaced by RxnMolecule.getComponentCount(int)

chemaxon.marvin.calculations.TPSAPlugin.getTPSA()
as of Marvin 4.1, replaced by TPSAPlugin.getSurfaceArea()

JMView.isSetVisible(int)
as of Marvin 3.3, replaced by isAtomSetVisible

chemaxon.struc.RxnMolecule.removeStructure(int, int)
as of Marvin 4.1, replaced by RxnMolecule.removeComponent(int, int)

chemaxon.marvin.calculations.pKaPlugin.setCalcAlways(boolean)
replaced by setModel(int)

chemaxon.struc.MolAtom.setMassnoIfKnown(String)
as of Marvin 4.1, replaced by MolAtom.setForSpecIsotopeSymbol(String)

JMView.setSetColor(int, int)
as of Marvin 3.3, replaced by setAtomSetColor

JMView.setSetSeq(int, int, int)
as of Marvin 3.3, replaced by setAtomSetSeq

chemaxon.struc.MoleculeGraph.setSetSeqs(int)
as of Marvin 4.0, replaced by setAtomSetSeq

JMView.setSetVisible(int, boolean)
as of Marvin 3.3, replaced by setAtomSetVisible

chemaxon.struc.sgroup.SuperatomSgroup.updateSgroupCrossings()
as of Marvin 3.3, replaced by Sgroup.findCrossingBonds()