Overview  Package  Class  Tree  Deprecated  Index  Help 
 PREV   NEXT FRAMES    NO FRAMES    

Serialized Form

Class chemaxon.marvin.sketch.modules.ArrowSM extends LineSM implements Serializable

serialVersionUID: 8529842567778601689l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.marvin.sketch.modules.ArrowSM.Regular extends ArrowSM implements Serializable

Class chemaxon.marvin.sketch.modules.ArrowSM.TwoHeaded extends ArrowSM implements Serializable

Class chemaxon.marvin.sketch.AtomSM extends SketchMode implements Serializable

serialVersionUID: -5009627643303957609l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.marvin.modules.AutoMapper extends chemaxon.marvin.util.MarvinModule implements Serializable

Serialized Fields

reaction

RxnMolecule reaction
current reaction to be auto-mapped

mappingMode

int mappingMode
mapping mode (see MAPPING_MODE_* constants above)

ignoreH

boolean ignoreH
by default all explicit hydrogens are mapped

iterator

chemaxon.marvin.modules.AutoMapper.RxnMoleculeAtomIterator iterator
iterator to enumerate reactant/product atoms

embeddedIterator

chemaxon.marvin.modules.AutoMapper.RxnMoleculeAtomIterator embeddedIterator
another iterator object used in methods wich are called from inside an iterator loop

productAtomCount

int productAtomCount
total number of atoms on product side

reactantAtomCount

int reactantAtomCount
total number of atoms on reactant side

carbonCount

int carbonCount
maximum number of carbons on product and reactant side

preMappedAtoms

int[][] preMappedAtoms
atoms that are already mapped in the input reaction

preMappedAtomCount

int preMappedAtomCount
number of direct mapped atoms (mapped in the initial rxn molecule)

preMappedReactantAtomCount

int preMappedReactantAtomCount
number of direct mapped atoms on the reactant side of the reaction

mcsMappedAtoms

int[][] mcsMappedAtoms
atoms that are mapped in an maximum common substructure search

mcsMappedAtomCount

int mcsMappedAtomCount
number of atoms matched by the MCS procedure

initialMapIndex

boolean[] initialMapIndex
Set of initial map indices. Map ids are not neccessarily consecutive, input reaction can contain arbitrary yet valid ids.

fixedMapIndex

boolean[] fixedMapIndex
initial map indices plus those set by mcs based mapping

currentSize

int currentSize
temporarily used during initialisation, size of state[] already used

size

int size
backtrack problem size

maxMapIndex

int maxMapIndex
maximal map index found in either side of the original reaction

currentMapIndex

int currentMapIndex
used in nextMapIndex()

complexityThreshold

double complexityThreshold

stepCountLimit

long stepCountLimit

stepCount

long stepCount

state

int[] state
current state in the search space: a number written in a mixed number system; element 0 is the highest order digit; this is the heart of the backtracking procedure

baseNumber

int[] baseNumber
base number of the mixed number system in each position

carry

boolean carry
carry flag of the mixed number state, indicates end of search

pos

int pos
the leftmost position (highest significant digit) where the state represented by the mixed number state does not satisfy solution or partial solution conditions

isWidow

boolean[] isWidow
indicates if a reactant atom is a widow, that is, missing from product side

positionToReactantAtom

int[] positionToReactantAtom
associates digit to reactant side atom index

valueToProductAtom

int[][] valueToProductAtom
associates mixed number digit values to product atoms

productAtomMap

int[][] productAtomMap
current mappings of product atoms

reactantAtomMap

int[][] reactantAtomMap
current mappings of reactant atoms

productAtoms

int[] productAtoms
temporarily used during initialisation: product atom indices to be inserted, see addAtomToBacktracking( int compositeId, int atomNumber, int atomMassno )

reactantMapMatrix

int[] reactantMapMatrix

productMapMatrix

int[] productMapMatrix

maps

int[][] maps
solutions maps stored in order of rank (score), smallest (best) first

scores

float[] scores
scored associated to maps, sorted in ascending order, best first

storedMapsCount

int storedMapsCount
number of stored maps (actual size of maps[][] and scores)

css

chemaxon.marvin.modules.CommonStructureSearch css
common structure search to spped up mapping (decrease search space)

Class chemaxon.marvin.sketch.BondSM extends SketchMode implements Serializable

serialVersionUID: 6282033706405196916l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Serialized Fields

incType

boolean incType
Increase bond type by one for mouse click.

wasDoubleBeforeClick

boolean wasDoubleBeforeClick
Bond order was double before the user clicked on it first.

Class chemaxon.struc.CEdge extends java.lang.Object implements Serializable

serialVersionUID: 5220503088168062320l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes an edge. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes an edge. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.struc.CGraph extends java.lang.Object implements Serializable

serialVersionUID: 6209968193612740707l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes a graph. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes a graph. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Serialized Fields

grinvOptions

int grinvOptions
Options used to last calculate grinv.

Class chemaxon.struc.CNode extends java.lang.Object implements Serializable

serialVersionUID: -7646006430497877205l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes a node. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes a node. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.marvin.plugin.CommandPlugger extends java.lang.Object implements Serializable

serialVersionUID: 2693596825215818164l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes the plugger. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes the plugger. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.struc.CTransform3D extends java.lang.Object implements Serializable

serialVersionUID: 0l

Serialization Methods

readExternal

public void readExternal(java.io.ObjectInput in)
                  throws java.io.IOException
Deserializes a transformation matrix.

Throws:
java.io.IOException
Since:
3.5, 11/02/2004

writeExternal

public void writeExternal(java.io.ObjectOutput out)
                   throws java.io.IOException
Serializes a transformation matrix.

Throws:
java.io.IOException
Since:
3.5, 11/02/2004

Class chemaxon.struc.sgroup.DataSgroup extends Sgroup implements Serializable

serialVersionUID: -3132191586564122343l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes a data Sgroup. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes a data Sgroup. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Serialized Fields

sb

java.lang.StringBuffer sb
temporary variable for getLineOnScreen

Class chemaxon.struc.DPoint3 extends java.lang.Object implements Serializable

serialVersionUID: 0l

Serialization Methods

readExternal

public void readExternal(java.io.ObjectInput in)
                  throws java.io.IOException,
                         java.lang.ClassNotFoundException
Deserializes a 3D point.

writeExternal

public void writeExternal(java.io.ObjectOutput out)
                   throws java.io.IOException
Serializes a 3D point.

Class chemaxon.marvin.sketch.modules.EFlow1SM extends EFlowSM implements Serializable

serialVersionUID: 1470167400244882010l

Class chemaxon.marvin.sketch.modules.EFlowSM extends LineSM implements Serializable

serialVersionUID: 7628926124658632381l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.marvin.space.GraphicScene extends javax.swing.JPanel implements Serializable

Serialized Fields

registered

boolean registered
The license index given by the LicenseManager.

eventHandler

chemaxon.marvin.space.MSpaceEventHandler eventHandler

progressBar

chemaxon.marvin.space.gui.JMSpaceProgressBar progressBar

rowCount

int rowCount
layout of the graphic view: number of cells per row

columnCount

int columnCount
layout of the graphic view: number of cells per column

activeCell

int activeCell
index of the active cell: cells are numbered line-by-line

cells

GraphicCell[] cells
components per cells, line-by-line 0 is the top-left corner

cellCount

int cellCount
number of cells (there might be fewer cells than cells.length())

needsRefresh

int needsRefresh
Indicates with internal index which cell needs redraw. -1 means none, cellCount means all cells.

needsReset

int needsReset

initialized

boolean initialized

antialias

boolean antialias

synchronousMode

boolean synchronousMode

verboseLevel

int verboseLevel

motionmode

int motionmode
standing or moving mode

width

int width
physical width of the entire scene (in pixels)

height

int height
physical height of the entire scene (in pixels)

backgroundColor

java.awt.Color backgroundColor
we use java.awt.Color in the following cases - when the color does not change too often - when the user can change the given color - when we don't have to give it to OGL too often (like color of an atom, etc) These are e.g. : background color, constant component colors

backgroundColorChanged

boolean backgroundColorChanged

transparentBackground

int transparentBackground

smoothBackground

boolean smoothBackground

rx

double rx
rotation around x-y-z axises

ry

double ry
rotation around x-y-z axises

rz

double rz
rotation around x-y-z axises

gl

javax.media.opengl.GL gl

glu

javax.media.opengl.glu.GLU glu

glAutoDrawable

javax.media.opengl.GLAutoDrawable glAutoDrawable

canvas

javax.media.opengl.GLCanvas canvas

capabilities

javax.media.opengl.GLCapabilities capabilities

gltext

chemaxon.marvin.space.util.GLText gltext
this is used to display warning about unregistered product

globalDrawProperties

java.util.Properties globalDrawProperties

Class JMSketch extends javax.swing.JApplet implements Serializable

Serialized Fields

sketchPanel

chemaxon.marvin.sketch.swing.SketchPanel sketchPanel

methodCalls

java.util.Vector methodCalls

methodCallThread

java.lang.Thread methodCallThread

debug

int debug

Class JMView extends javax.swing.JApplet implements Serializable

Serialized Fields

viewPanel

chemaxon.marvin.view.swing.ViewPanel viewPanel

animated

java.lang.String animated

methodCalls

java.util.Vector methodCalls

methodCallThread

java.lang.Thread methodCallThread

debug

int debug

Class chemaxon.marvin.sketch.modules.LineSM extends MObjectSM implements Serializable

serialVersionUID: -3027378722557760362l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.marvin.modules.MacroMolecule.BadMoleculeException extends java.lang.Exception implements Serializable

Class chemaxon.struc.graphics.MAtomSetPoint extends MPoint implements Serializable

serialVersionUID: 5932389976054063500l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes the object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes the object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.struc.graphics.MChemicalStruct extends MObject implements Serializable

serialVersionUID: 7098670860634457343l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes the object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes the object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.struc.MDocument extends java.lang.Object implements Serializable

serialVersionUID: 553557622036381832l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes a document. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes a document. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.struc.MDocument.Prop extends chemaxon.struc.MProp implements Serializable

Class chemaxon.struc.graphics.MEFlow extends MPolyline implements Serializable

serialVersionUID: 891769518407563834l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes the object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes the object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.struc.graphics.MFont extends java.lang.Object implements Serializable

serialVersionUID: -7769715209509613515l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes the object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes the object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.struc.graphics.MMidPoint extends MPoint implements Serializable

serialVersionUID: 5307361876930807239l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes the object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes the object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.struc.graphics.MMidPoint.Sticky extends MMidPoint implements Serializable

serialVersionUID: 3223068581543532992l

Class chemaxon.struc.MObject extends java.lang.Object implements Serializable

serialVersionUID: 2435517510938087080l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes the object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes the object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.marvin.sketch.MObjectPlugger extends CommandPlugger implements Serializable

serialVersionUID: -3008955269420953203l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes the object plugger. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes the object plugger. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.marvin.sketch.MObjectSM extends SketchMode implements Serializable

serialVersionUID: 8408081115999010988l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.struc.MolAtom extends CNode implements Serializable

serialVersionUID: 293134874065432398l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes an atom. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes an atom. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.struc.MolBond extends CEdge implements Serializable

serialVersionUID: 6532576325442840116l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes a bond. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes a bond. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.struc.Molecule extends MoleculeGraph implements Serializable

serialVersionUID: 7275486436840296305l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes a molecule. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes a molecule. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.struc.MoleculeGraph extends CGraph implements Serializable

serialVersionUID: -4663655945908176002l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes a molecule graph. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes a molecule graph. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.marvin.sketch.MoleculeSM extends SketchMode implements Serializable

serialVersionUID: 879978814934682047l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Serialized Fields

parentSketchMode

SketchMode parentSketchMode

Class chemaxon.marvin.util.MolExportException extends java.io.IOException implements Serializable

Class chemaxon.struc.MPoint extends MObject implements Serializable

serialVersionUID: -3067277054033050963l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes the object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes the object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.struc.graphics.MPolyline extends MObject implements Serializable

serialVersionUID: 4958026600768388648l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes the object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes the object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.struc.MPropertyContainer extends java.lang.Object implements Serializable

serialVersionUID: -2575268570438177098l

Serialization Methods

readExternal

public void readExternal(java.io.ObjectInput in)
                  throws java.io.IOException,
                         java.lang.ClassNotFoundException
Restores the property container's state.

Throws:
java.io.IOException - if I/O errors occur
java.lang.ClassNotFoundException - If the class for an object being restored cannot be found.

writeExternal

public void writeExternal(java.io.ObjectOutput out)
                   throws java.io.IOException
Saves the property container's state.

Throws:
java.io.IOException - Includes any I/O exceptions that may occur

Class chemaxon.struc.graphics.MRectangle extends MPolyline implements Serializable

serialVersionUID: 2948229815278089239l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes the object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes the object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.struc.graphics.MRectanglePoint extends MPoint implements Serializable

serialVersionUID: -3067277054033050963l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes the object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes the object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.struc.graphics.MRectanglePoint.Sticky extends MRectanglePoint implements Serializable

serialVersionUID: 3364078480306200948l

Class chemaxon.struc.MSelectionDocument extends MDocument implements Serializable

serialVersionUID: 2379294894434293119l

Class chemaxon.struc.graphics.MTextAttributes extends java.lang.Object implements Serializable

serialVersionUID: 6561552003080652755l

Serialization Methods

readExternal

public void readExternal(java.io.ObjectInput in)
                  throws java.io.IOException,
                         java.lang.ClassNotFoundException

writeExternal

public void writeExternal(java.io.ObjectOutput out)
                   throws java.io.IOException

Class chemaxon.struc.graphics.MTextBox extends MRectangle implements Serializable

serialVersionUID: -7272723232157967384l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes the object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes the object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.struc.graphics.MTextDocument extends java.lang.Object implements Serializable

serialVersionUID: 6305880304790247656l

Serialization Methods

readExternal

public void readExternal(java.io.ObjectInput in)
                  throws java.io.IOException,
                         java.lang.ClassNotFoundException
Restores the document.

Throws:
java.io.IOException - if I/O errors occur
java.lang.ClassNotFoundException - If the class for an object being restored cannot be found.

writeExternal

public void writeExternal(java.io.ObjectOutput out)
                   throws java.io.IOException
Saves the document.

Throws:
java.io.IOException - Includes any I/O exceptions that may occur

Class chemaxon.struc.sgroup.MultipleSgroup extends Sgroup implements Serializable

serialVersionUID: -1146464131016252826l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes a multiple Sgroup. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes a multiple Sgroup. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.marvin.plugin.gui.OptionsPane extends javax.swing.JFrame implements Serializable

Serialized Fields

parameterPanel

ParameterPanelHandler parameterPanel

okActionListener

java.awt.event.ActionListener okActionListener

key

java.lang.String key

title

java.lang.String title

cancel

javax.swing.JButton cancel

ok

javax.swing.JButton ok

Class chemaxon.marvin.plugin.gui.ParameterPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

items

chemaxon.marvin.plugin.gui.ParameterItem[] items

licenseItem

chemaxon.marvin.plugin.gui.LicenseItem licenseItem

Class chemaxon.marvin.plugin.PluginException extends java.lang.Exception implements Serializable

Serialized Fields

e

java.lang.Exception e
The wrapped exception.

level

int level
Error level.

Class chemaxon.marvin.sketch.modules.PolylineSM extends LineSM implements Serializable

serialVersionUID: 4787981184558760404l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.struc.QueryBond extends MolBond implements Serializable

serialVersionUID: -5025485107616067648l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes a bond. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes a bond. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.marvin.sketch.modules.RectangleSM extends MObjectSM implements Serializable

serialVersionUID: 7651042804024754357l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.struc.RgMolecule extends Molecule implements Serializable

serialVersionUID: -939153732283455787l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes an RgMolecule. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes an RgMolecule. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.marvin.sketch.RubberSM extends SketchMode implements Serializable

serialVersionUID: -7010050364100540729l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Serialized Fields

selectUtil

chemaxon.marvin.sketch.SelectUtil selectUtil

Class chemaxon.struc.RxnMolecule extends Molecule implements Serializable

serialVersionUID: -2863036104564183121l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes a reaction. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes a reaction. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.struc.SelectionMolecule extends MoleculeGraph implements Serializable

Class chemaxon.marvin.sketch.SelectSM extends SketchMode implements Serializable

serialVersionUID: 1430844896216918052l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Serialized Fields

selectUtil

chemaxon.marvin.sketch.SelectUtil selectUtil

selectingText

boolean selectingText

Class chemaxon.struc.Sgroup extends java.lang.Object implements Serializable

serialVersionUID: -6209766549185582411l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes an Sgroup. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes an Sgroup. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.struc.sgroup.SgroupAtom extends MolAtom implements Serializable

serialVersionUID: -3185634359981637075l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes an Sgroup superatom. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes an Sgroup superatom. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Serialized Fields

labelCenter

int labelCenter

Class chemaxon.marvin.sketch.SgroupSM extends SketchMode implements Serializable

serialVersionUID: 5435507500908348259l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.marvin.sketch.SketchMode extends java.lang.Object implements Serializable

serialVersionUID: 511717688630484043l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.struc.sgroup.SuperatomSgroup extends Sgroup implements Serializable

serialVersionUID: 2968529752634209305l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes a superatom Sgroup. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes a superatom Sgroup. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Class chemaxon.marvin.sketch.modules.TextBoxSM extends RectangleSM implements Serializable

serialVersionUID: 7100978795783445200l

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream ois)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
Deserializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

writeObject

private void writeObject(java.io.ObjectOutputStream oos)
                  throws java.io.IOException
Serializes a sketcher object. Be extremely cautious when editing this method! Backward compatibility must be maintained.

Serialized Fields

selectingText

boolean selectingText

Overview  Package  Class  Tree  Deprecated  Index  Help 
 PREV   NEXT FRAMES    NO FRAMES